Bioconductor Background correction

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agilent single channel plotMA background correction

updated 6.9 years ago by Gordon Smyth 52k • written 6.9 years ago by CantExitVIM ▴ 10

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2.4k

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normalization background correction

updated 7.7 years ago by DataFanatic ▴ 10 • written 9.8 years ago by dimitri.leonid.lindenwald ▴ 50

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1.6k

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agilent microarrays background correction

updated 8.2 years ago by Gordon Smyth 52k • written 8.2 years ago by ragavendrasamy.b • 0

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4.8k

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limma agilent offset background correction microarray

updated 9.2 years ago by James W. MacDonald 68k • written 9.2 years ago by Konstantinos Yeles ▴ 80

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1.3k

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gcrma normalization background correction microarray

9.4 years ago svlachavas ▴ 840

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2.9k

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illumina human ht-12 v4 limma background correction BeadStudio microarray

updated 9.4 years ago by Gordon Smyth 52k • written 9.4 years ago by svlachavas ▴ 840

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1.0k

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Normalization background correction

updated 10.0 years ago by Gordon Smyth 52k • written 17.5 years ago by Bandyopadhyay, Somnath Som ▴ 60

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Answer: Comparison of results obtained from a subset of the data versus the complete dat by swbarnes2 ★ 1.4k

In general, using the entire dataset and then just comparing the subgroups you want within the whole dataset is preferable.

Comment: Differential expression analysis using two TCGA datasets by ATpoint ★ 4.8k

If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…

Answer: PhD scholar by ATpoint ★ 4.8k

Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…

Answer: how to use `arrayWeightsQuick()`? by Gordon Smyth 52k

Yes, that is the correct way to use `arrayWeightsQuick`. Thanks for pointing out that there is still a reference to `arrayWeightsSimple` i…

Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…

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Answer: Origin of the labels for the SingleCellMultiModal dataset

Answer: PhD scholar

Answer: how to use `arrayWeightsQuick()`?

Having Trouble Using CNE12() and CNE21() in CNEr

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Popular Question to Ariel Chernomoretz ▴ 170